It might be the Optimate. I think that it works by going through cycles of slight discharging & trickle charging. When it's going though discharge cycle the battery voltage may temporarily drop below the alert level.
I have a tracker & alarm but no optimate. If bike is left for two weeks I do get a low battery alert, but bike always starts fine.
I have a tracker & alarm but no optimate. If bike is left for two weeks I do get a low battery alert, but bike always starts fine.